PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G004200.1.p
Common NameGLYMA_15G004200, LOC100805499
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 179aa    MW: 20287.6 Da    PI: 6.629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G004200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18755254
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                         +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Glyma.15G004200.1.p  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                         69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.75E-35666No hitNo description
Gene3DG3DSA:3.30.730.101.4E-34764IPR001471AP2/ERF domain
SMARTSM003805.4E-41770IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21766IPR016177DNA-binding domain
PROSITE profilePS5103221.127764IPR001471AP2/ERF domain
PfamPF008471.9E-11756IPR001471AP2/ERF domain
PRINTSPR003672.8E-11819IPR001471AP2/ERF domain
PRINTSPR003672.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR  60
TNFPYNPNEP QSSSSKLLSA TLTAKLHKCH MASLSLQMSK QKQSQTEPHQ GSSNDSGNSI  120
AGTSSDNTQF RWPEEEGQVE LLEQQQQFQP VLQDDHIEQM IQELLDYGSM EISFVHSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17868667ATERF1
3gcc_A1e-17868667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927832e-92BT092783.1 Soybean clone JCVI-FLGm-11B8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547419.11e-132PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW57e-77ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLI1MCB71e-132I1MCB7_SOYBN; Uncharacterized protein
STRINGGLYMA15G00660.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-47ERF family protein